5AFU image
Deposition Date 2015-01-26
Release Date 2015-03-11
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5AFU
Keywords:
Title:
Cryo-EM structure of dynein tail-dynactin-BICD2N complex
Biological Source:
Source Organism:
SUS SCROFA (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
8.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:A (auth: 1)
Chain Length:361
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:B (auth: 2)
Chain Length:359
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:C (auth: 3), D (auth: 4)
Chain Length:350
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:E (auth: 5), F (auth: 6)
Chain Length:275
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Gene (Uniprot):ACTR1A
Chain IDs:G (auth: A), H (auth: B), I (auth: C), J (auth: D), K (auth: E), L (auth: F), M (auth: G), O (auth: I)
Chain Length:370
Number of Molecules:8
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:ACTIN, CYTOPLASMIC 1
Gene (Uniprot):ACTB
Chain IDs:N (auth: H)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Gene (Uniprot):ACTR10
Chain IDs:P (auth: J)
Chain Length:379
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1
Gene (Uniprot):CAPZA1
Chain IDs:Q (auth: K)
Chain Length:275
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN CAPPING PROTEIN BETA SUBUNIT VARIANT II
Gene (Uniprot):CAPZB
Chain IDs:R (auth: L)
Chain Length:270
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:S (auth: M)
Chain Length:587
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN 6
Chain IDs:T (auth: N)
Chain Length:616
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:U (auth: O), V (auth: P)
Chain Length:65
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:W (auth: Q), X (auth: R)
Chain Length:87
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:Y (auth: U)
Chain Length:168
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:Z (auth: V)
Chain Length:165
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:AA (auth: Y)
Chain Length:243
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:BA (auth: Z)
Chain Length:52
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:CA (auth: a)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:DA (auth: b)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:EA (auth: c)
Chain Length:31
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:FA (auth: d)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:GA (auth: z)
Chain Length:52
Number of Molecules:1
Biological Source:SUS SCROFA
Primary Citation
The Structure of the Dynactin Complex and its Interaction with Dynein.
Science 347 1441 ? (2015)
PMID: 25814576 DOI: 10.1126/SCIENCE.AAA4080

Abstact

Dynactin is an essential cofactor for the microtubule motor cytoplasmic dynein-1. We report the structure of the 23-subunit dynactin complex by cryo-electron microscopy to 4.0 angstroms. Our reconstruction reveals how dynactin is built around a filament containing eight copies of the actin-related protein Arp1 and one of β-actin. The filament is capped at each end by distinct protein complexes, and its length is defined by elongated peptides that emerge from the α-helical shoulder domain. A further 8.2 angstrom structure of the complex between dynein, dynactin, and the motility-inducing cargo adaptor Bicaudal-D2 shows how the translational symmetry of the dynein tail matches that of the dynactin filament. The Bicaudal-D2 coiled coil runs between dynein and dynactin to stabilize the mutually dependent interactions between all three components.

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