Planned Maintenance: Some services may turn out to be unavailable from 15th January, 2026 to 16th January, 2026. We apologize for the inconvenience!

5AFU image
Deposition Date 2015-01-26
Release Date 2015-03-11
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5AFU
Keywords:
Title:
Cryo-EM structure of dynein tail-dynactin-BICD2N complex
Biological Source:
Source Organism(s):
SUS SCROFA (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
8.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:A (auth: 1)
Chain Length:361
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:B (auth: 2)
Chain Length:359
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:C (auth: 3), D (auth: 4)
Chain Length:350
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNEIN TAIL
Chain IDs:E (auth: 5), F (auth: 6)
Chain Length:275
Number of Molecules:2
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Gene (Uniprot):ACTR1A
Chain IDs:G (auth: A), H (auth: B), I (auth: C), J (auth: D), K (auth: E), L (auth: F), M (auth: G), O (auth: I)
Chain Length:370
Number of Molecules:8
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ACTIN, CYTOPLASMIC 1
Gene (Uniprot):ACTB
Chain IDs:N (auth: H)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Gene (Uniprot):ACTR10
Chain IDs:P (auth: J)
Chain Length:379
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1
Gene (Uniprot):CAPZA1
Chain IDs:Q (auth: K)
Chain Length:275
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-ACTIN CAPPING PROTEIN BETA SUBUNIT VARIANT II
Gene (Uniprot):CAPZB
Chain IDs:R (auth: L)
Chain Length:270
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:S (auth: M)
Chain Length:587
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN 6
Chain IDs:T (auth: N)
Chain Length:616
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:U (auth: O), V (auth: P)
Chain Length:65
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:W (auth: Q), X (auth: R)
Chain Length:87
Number of Molecules:2
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:Y (auth: U)
Chain Length:168
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:Z (auth: V)
Chain Length:165
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:AA (auth: Y)
Chain Length:243
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:BA (auth: Z)
Chain Length:52
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:CA (auth: a)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:DA (auth: b)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:EA (auth: c)
Chain Length:31
Number of Molecules:1
Biological Source:SUS SCROFA
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DYNACTIN
Chain IDs:FA (auth: d)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
Chain IDs:GA (auth: z)
Chain Length:52
Number of Molecules:1
Biological Source:SUS SCROFA
Primary Citation
The Structure of the Dynactin Complex and its Interaction with Dynein.
Science 347 1441 ? (2015)
PMID: 25814576 DOI: 10.1126/SCIENCE.AAA4080

Abstact

Dynactin is an essential cofactor for the microtubule motor cytoplasmic dynein-1. We report the structure of the 23-subunit dynactin complex by cryo-electron microscopy to 4.0 angstroms. Our reconstruction reveals how dynactin is built around a filament containing eight copies of the actin-related protein Arp1 and one of β-actin. The filament is capped at each end by distinct protein complexes, and its length is defined by elongated peptides that emerge from the α-helical shoulder domain. A further 8.2 angstrom structure of the complex between dynein, dynactin, and the motility-inducing cargo adaptor Bicaudal-D2 shows how the translational symmetry of the dynein tail matches that of the dynactin filament. The Bicaudal-D2 coiled coil runs between dynein and dynactin to stabilize the mutually dependent interactions between all three components.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback