5AEA image
Deposition Date 2015-08-27
Release Date 2016-04-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5AEA
Keywords:
Title:
Crystal structure of human NCAM domain 1
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NEURAL CELL ADHESION MOLECULE 1
Gene (Uniprot):NCAM1
Chain IDs:A, B
Chain Length:118
Number of Molecules:2
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
I-Bodies, Human Single Domain Antibodies that Antagonize Chemokine Receptor Cxcr4.
J.Biol.Chem. 291 12641 ? (2016)
PMID: 27036939 DOI: 10.1074/JBC.M116.721050

Abstact

CXCR4 is a G protein-coupled receptor with excellent potential as a therapeutic target for a range of clinical conditions, including stem cell mobilization, cancer prognosis and treatment, fibrosis therapy, and HIV infection. We report here the development of a fully human single-domain antibody-like scaffold termed an "i-body," the engineering of which produces an i-body library possessing a long complementarity determining region binding loop, and the isolation and characterization of a panel of i-bodies with activity against human CXCR4. The CXCR4-specific i-bodies show antagonistic activity in a range of in vitro and in vivo assays, including inhibition of HIV infection, cell migration, and leukocyte recruitment but, importantly, not the mobilization of hematopoietic stem cells. Epitope mapping of the three CXCR4 i-bodies AM3-114, AM4-272, and AM3-523 revealed binding deep in the binding pocket of the receptor.

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Primary Citation of related structures