5ADX image
Deposition Date 2015-08-24
Release Date 2015-12-30
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5ADX
Title:
CryoEM structure of dynactin complex at 4.0 angstrom resolution
Biological Source:
Source Organism:
SUS SCROFA (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ACTIN RELATED PROTEIN 1
Gene (Uniprot):ACTR1A
Chain IDs:A, B, C, D, E, F, G, I
Chain Length:370
Number of Molecules:8
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:ACTIN, CYTOPLASMIC 1
Gene (Uniprot):ACTB
Chain IDs:H
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:ACTIN RELATED PROTEIN 11
Gene (Uniprot):ACTR10
Chain IDs:J
Chain Length:417
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:CAPPING PROTEIN (ACTIN FILAMENT) MUSCLE Z-LINE, ALPHA 1
Gene (Uniprot):CAPZA1
Chain IDs:K
Chain Length:275
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:F-ACTIN CAPPING PROTEIN BETA SUBUNIT VARIANT II
Gene (Uniprot):CAPZB
Chain IDs:L
Chain Length:270
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:M
Chain Length:824
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:N
Chain Length:818
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 3
Chain IDs:O, P
Chain Length:88
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:Q, R
Chain Length:91
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN 5
Gene (Uniprot):DCTN6
Chain IDs:S (auth: U)
Chain Length:190
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 6
Chain IDs:T (auth: V)
Chain Length:165
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:U (auth: Y)
Chain Length:243
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:V (auth: Z), AA (auth: z)
Chain Length:419
Number of Molecules:2
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:W (auth: a)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:X (auth: b)
Chain Length:71
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:Y (auth: c)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Polymer Type:polypeptide(L)
Molecule:DYNACTIN SUBUNIT 2
Chain IDs:Z (auth: d)
Chain Length:370
Number of Molecules:1
Biological Source:SUS SCROFA
Ligand Molecules
Primary Citation
The Structure of the Dynactin Complex and its Interaction with Dynein.
Science 347 1441 ? (2015)
PMID: 25814576 DOI: 10.1126/SCIENCE.AAA4080

Abstact

Dynactin is an essential cofactor for the microtubule motor cytoplasmic dynein-1. We report the structure of the 23-subunit dynactin complex by cryo-electron microscopy to 4.0 angstroms. Our reconstruction reveals how dynactin is built around a filament containing eight copies of the actin-related protein Arp1 and one of β-actin. The filament is capped at each end by distinct protein complexes, and its length is defined by elongated peptides that emerge from the α-helical shoulder domain. A further 8.2 angstrom structure of the complex between dynein, dynactin, and the motility-inducing cargo adaptor Bicaudal-D2 shows how the translational symmetry of the dynein tail matches that of the dynactin filament. The Bicaudal-D2 coiled coil runs between dynein and dynactin to stabilize the mutually dependent interactions between all three components.

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Disease

Primary Citation of related structures