5AC9 image
Entry Detail
PDB ID:
5AC9
Keywords:
Title:
Structure-based energetics of protein interfaces guide Foot-and-Mouth disease virus vaccine design
Biological Source:
PDB Version:
Deposition Date:
2015-08-14
Release Date:
2015-09-23
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:VP1
Chain IDs:A (auth: 1)
Chain Length:208
Number of Molecules:1
Biological Source:FOOT-AND-MOUTH DISEASE VIRUS - TYPE O
Polymer Type:polypeptide(L)
Description:VP3
Chain IDs:B (auth: 2)
Chain Length:218
Number of Molecules:1
Biological Source:FOOT-AND-MOUTH DISEASE VIRUS - TYPE O
Polymer Type:polypeptide(L)
Description:VP2
Mutations:YES
Chain IDs:C (auth: 3)
Chain Length:220
Number of Molecules:1
Biological Source:FOOT-AND-MOUTH DISEASE VIRUS - TYPE O
Polymer Type:polypeptide(L)
Description:VP4
Chain IDs:D (auth: 4)
Chain Length:85
Number of Molecules:1
Biological Source:FOOT-AND-MOUTH DISEASE VIRUS - TYPE O
Ligand Molecules
Primary Citation
Structure-Based Energetics of Protein Interfaces Guide Foot-and-Mouth Disease Vaccine Design
Nat.Struct.Mol.Biol. 22 788 ? (2015)
PMID: 26389739 DOI: 10.1038/NSMB.3096

Abstact

Virus capsids are primed for disassembly, yet capsid integrity is key to generating a protective immune response. Foot-and-mouth disease virus (FMDV) capsids comprise identical pentameric protein subunits held together by tenuous noncovalent interactions and are often unstable. Chemically inactivated or recombinant empty capsids, which could form the basis of future vaccines, are even less stable than live virus. Here we devised a computational method to assess the relative stability of protein-protein interfaces and used it to design improved candidate vaccines for two poorly stable, but globally important, serotypes of FMDV: O and SAT2. We used a restrained molecular dynamics strategy to rank mutations predicted to strengthen the pentamer interfaces and applied the results to produce stabilized capsids. Structural analyses and stability assays confirmed the predictions, and vaccinated animals generated improved neutralizing-antibody responses to stabilized particles compared to parental viruses and wild-type capsids.

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Primary Citation of related structures