5ABD image
Entry Detail
PDB ID:
5ABD
Title:
CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF CU
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-08-05
Release Date:
2016-09-28
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1
Chain IDs:A (auth: E), B (auth: I), C (auth: X)
Chain Length:95
Number of Molecules:3
Biological Source:HOMO SAPIENS
Primary Citation
Biophysical Studies of the Induced Dimerization of Human Vegf R Receptor 1 Binding Domain by Divalent Metals Competing with Vegf-A
Plos One 11 67755 ? (2016)
PMID: 27942001 DOI: 10.1371/JOURNAL.PONE.0167755

Abstact

Angiogenesis is tightly regulated through the binding of vascular endothelial growth factors (VEGFs) to their receptors (VEGFRs). In this context, we showed that human VEGFR1 domain 2 crystallizes in the presence of Zn2+, Co2+ or Cu2+ as a dimer that forms via metal-ion interactions and interlocked hydrophobic surfaces. SAXS, NMR and size exclusion chromatography analyses confirm the formation of this dimer in solution in the presence of Co2+, Cd2+ or Cu2+. Since the metal-induced dimerization masks the VEGFs binding surface, we investigated the ability of metal ions to displace the VEGF-A binding to hVEGFR1: using a competition assay, we evidenced that the metals displaced the VEGF-A binding to hVEGFR1 extracellular domain binding at micromolar level.

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