5A8G image
Deposition Date 2015-07-15
Release Date 2015-11-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5A8G
Keywords:
Title:
Crystal structure of the wild-type Staphylococcus aureus N- acetylneurminic acid lyase in complex with fluoropyruvate
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-ACETYLNEURAMINATE LYASE
Gene (Uniprot):nanA
Chain IDs:A, B
Chain Length:300
Number of Molecules:2
Biological Source:STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KPF A LYS N-(1-CARBOXY-2-FLUORO-ETHENYL) LYSINE
Primary Citation
Evaluation of Fluoropyruvate as Nucleophile in Reactions Catalysed by N-Acetyl Neuraminic Acid Lyase Variants: Scope, Limitations and Stereoselectivity.
Org.Biomol.Chem. 14 105 ? (2016)
PMID: 26537532 DOI: 10.1039/C5OB02037A

Abstact

The catalysis of reactions involving fluoropyruvate as donor by N-acetyl neuraminic acid lyase (NAL) variants was investigated. Under kinetic control, the wild-type enzyme catalysed the reaction between fluoropyruvate and N-acetyl mannosamine to give a 90 : 10 ratio of the (3R,4R)- and (3S,4R)-configured products; after extended reaction times, equilibration occurred to give a 30 : 70 mixture of these products. The efficiency and stereoselectivity of reactions of a range of substrates catalysed by the E192N, E192N/T167V/S208V and E192N/T167G NAL variants were also studied. Using fluoropyruvate and (2R,3S)- or (2S,3R)-2,3-dihydroxy-4-oxo-N,N-dipropylbutanamide as substrates, it was possible to obtain three of the four possible diastereomeric products; for each product, the ratio of anomeric and pyranose/furanose forms was determined. The crystal structure of S. aureus NAL in complex with fluoropyruvate was determined, assisting rationalisation of the stereochemical outcome of C-C bond formation.

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