5A7X image
Deposition Date 2015-07-10
Release Date 2015-08-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5A7X
Keywords:
Title:
negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
17.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HIV-1 YU2 GP120
Chain IDs:A, E, I
Chain Length:313
Number of Molecules:3
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS 1
Polymer Type:polypeptide(L)
Molecule:T-CELL SURFACE GLYCOPROTEIN CD4
Gene (Uniprot):CD4
Chain IDs:B, F, J
Chain Length:181
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:FAB OF BROADLY NEUTRALIZING ANTIBODY 17B
Chain IDs:C, G, K
Chain Length:214
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:FAB OF BROADLY NEUTRALIZING ANTIBODY 17B
Chain IDs:D, H, L
Chain Length:229
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195
Chain IDs:M, O, Q
Chain Length:215
Number of Molecules:3
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195
Chain IDs:N, P, R
Chain Length:244
Number of Molecules:3
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Broadly Neutralizing Antibody 8Anc195 Recognizes Closed and Open States of HIV-1 Env.
Cell(Cambridge,Mass.) 162 1379 ? (2015)
PMID: 26359989 DOI: 10.1016/J.CELL.2015.08.035

Abstact

The HIV-1 envelope (Env) spike contains limited epitopes for broadly neutralizing antibodies (bNAbs); thus, most neutralizing antibodies are strain specific. The 8ANC195 epitope, defined by crystal and electron microscopy (EM) structures of bNAb 8ANC195 complexed with monomeric gp120 and trimeric Env, respectively, spans the gp120 and gp41 Env subunits. To investigate 8ANC195's gp41 epitope at higher resolution, we solved a 3.58 Å crystal structure of 8ANC195 complexed with fully glycosylated Env trimer, revealing 8ANC195 insertion into a glycan shield gap to contact gp120 and gp41 glycans and protein residues. To determine whether 8ANC195 recognizes the CD4-bound open Env conformation that leads to co-receptor binding and fusion, one of several known conformations of virion-associated Env, we solved EM structures of an Env/CD4/CD4-induced antibody/8ANC195 complex. 8ANC195 binding partially closed the CD4-bound trimer, confirming structural plasticity of Env by revealing a previously unseen conformation. 8ANC195's ability to bind different Env conformations suggests advantages for potential therapeutic applications.

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Primary Citation of related structures