5A6V image
Entry Detail
PDB ID:
5A6V
Keywords:
Title:
Open and closed conformations and protonation states of Candida antarctica Lipase B: Xenon complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-07-01
Release Date:
2015-10-21
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.19
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:LIPASE B
Chain IDs:A, B
Chain Length:317
Number of Molecules:2
Biological Source:PSEUDOZYMA ANTARCTICA
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Open and Closed States of Candida Antarctica Lipase B: Protonation and the Mechanism of Interfacial Activation.
J.Lipid Res. 56 2348 ? (2015)
PMID: 26447231 DOI: 10.1194/JLR.M063388

Abstact

Lipases (EC 3.1.1.3) are ubiquitous hydrolases for the carboxyl ester bond of water-insoluble substrates, such as triacylglycerols, phospholipids, and other insoluble substrates, acting in aqueous as well as in low-water media, thus being of considerable physiological significance with high interest also for their industrial applications. The hydrolysis reaction follows a two-step mechanism, or "interfacial activation," with adsorption of the enzyme to a heterogeneous interface and subsequent enhancement of the lipolytic activity. Among lipases, Candida antarctica lipase B (CALB) has never shown any significant interfacial activation, and a closed conformation of CALB has never been reported, leading to the conclusion that its behavior was due to the absence of a lid regulating the access to the active site. The lid open and closed conformations and their protonation states are observed in the crystal structure of CALB at 0.91 Å resolution. Having the open and closed states at atomic resolution allows relating protonation to the conformation, indicating the role of Asp145 and Lys290 in the conformation alteration. The findings explain the lack of interfacial activation of CALB and offer new elements to elucidate this mechanism, with the consequent implications for the catalytic properties and classification of lipases.

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