5A13 image
Entry Detail
PDB ID:
5A13
Keywords:
Title:
Crystal structure of Chlorite Dismutase from Magnetospirillum sp. in complex with thiocyanate
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-04-27
Release Date:
2015-09-02
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CHLORITE DISMUTASE
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:245
Number of Molecules:10
Biological Source:MAGNETOSPIRILLUM SP.
Primary Citation
Ligand Binding to Chlorite Dismutase from Magnetospirillum Sp.
J.Phys.Chem.B 119 13859 ? (2015)
PMID: 26287794 DOI: 10.1021/ACS.JPCB.5B04141

Abstact

Chlorite dismutase (Cld) catalyzes the reduction of chlorite to chloride and dioxygen. Here, the ligand binding to Cld of Magnetospirillum sp. (MaCld) is investigated with X-ray crystallography and electron paramagnetic resonance (EPR). EPR reveals a large heterogeneity in the structure of wild-type MaCld, showing a variety of low- and high-spin ferric heme forms. Addition of an axial ligand, such as azide or imidazole, removes this heterogeneity almost entirely. This is in line with the two high resolution crystal structures of MaCld obtained in the presence of azide and thiocyanate that show the coordination of the ligands to the heme iron. The crystal structure of the MaCld-azide complex reveals a single well-defined orientation of the azide molecule in the heme pocket. EPR shows, however, a pH-dependent heme structure, probably due to acid-base transitions of the surrounding amino-acid residues stabilizing azide. For the azide and imidazole complex of MaCld, the hyperfine and nuclear quadrupole interactions with the close-by (14)N and (1)H nuclei are determined using pulsed EPR. These values are compared to the corresponding data for the low-spin forms observed in the ferric wild-type MaCld and to existing EPR data on azide and imidazole complexes of other heme proteins.

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