4wyb image
Deposition Date 2014-11-17
Release Date 2015-08-19
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4WYB
Title:
Structure of the Bud6 flank domain in complex with actin
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.49 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 32
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W (auth: X)
Chain Length:377
Number of Molecules:12
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bud site selection protein 6
Gene (Uniprot):BUD6
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X (auth: Y)
Chain Length:92
Number of Molecules:12
Biological Source:Saccharomyces cerevisiae
Primary Citation
Structure of a Bud6/Actin Complex Reveals a Novel WH2-like Actin Monomer Recruitment Motif.
Structure 23 1492 1499 (2015)
PMID: 26118535 DOI: 10.1016/j.str.2015.05.015

Abstact

In budding yeast, the actin-binding protein Bud6 cooperates with formins Bni1 and Bnr1 to catalyze the assembly of actin filaments. The nucleation-enhancing activity of Bud6 requires both a "core" domain that binds to the formin and a "flank" domain that binds monomeric actin. Here, we describe the structure of the Bud6 flank domain in complex with actin. Two helices in Bud6(flank) interact with actin; one binds in a groove at the barbed end of the actin monomer in a manner closely resembling the helix of WH2 domains, a motif found in many actin nucleation factors. The second helix rises along the face of actin. Mutational analysis verifies the importance of these Bud6-actin contacts for nucleation-enhancing activity. The Bud6 binding site on actin overlaps with that of the formin FH2 domain and is also incompatible with inter-subunit contacts in F-actin, suggesting that Bud6 interacts only transiently with actin monomers during filament nucleation.

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