4rl2 image
Deposition Date 2014-10-15
Release Date 2014-11-19
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4RL2
Keywords:
Title:
Structural and mechanistic insights into NDM-1 catalyzed hydrolysis of cephalosporins
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase NDM-1
Gene (Uniprot):blaNDM-1
Chain IDs:A, B
Chain Length:246
Number of Molecules:2
Biological Source:Klebsiella pneumoniae
Primary Citation
Structural and Mechanistic Insights into NDM-1 Catalyzed Hydrolysis of Cephalosporins.
J.Am.Chem.Soc. 136 14694 14697 (2014)
PMID: 25268575 DOI: 10.1021/ja508388e

Abstact

Cephalosporins constitute a large class of β-lactam antibiotics clinically used as antimicrobial drugs. New Dehli metallo-β-lactamase (NDM-1) poses a global threat to human health as it confers on bacterial pathogen resistance to almost all β-lactams, including penicillins, cephalosporins, and carbapenems. Here we report the first crystal structures of NDM-1 in complex with cefuroxime and cephalexin, as well as NMR spectra monitoring cefuroxime and cefixime hydrolysis catalyzed by NDM-1. Surprisingly, cephalosporoate intermediates were captured in both crystal structures determined at 1.3 and 2.0 Å. These results provide detailed information concerning the mechanism and pathways of cephalosporin hydrolysis. We also present the crystal structure and enzyme assays of a D124N mutant, which reveals that D124 most likely plays a more structural than catalytic role.

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Primary Citation of related structures