4i5n image
Deposition Date 2012-11-28
Release Date 2013-05-08
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4I5N
Keywords:
Title:
Structural mechanism of trimeric PP2A holoenzyme involving PR70: insight for Cdc6 dephosphorylation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
Gene (Uniprot):PPP2R1A
Chain IDs:A, D
Chain Length:584
Number of Molecules:2
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta - Cell division control protein 6 homolog chimeric construct
Gene (Uniprot):CDC6, PPP2R3B
Chain IDs:B, E
Chain Length:413
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha
Gene (Uniprot):PPP2CA
Chain IDs:C, F
Chain Length:311
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Microcystin-LR (MCLR) bound form
Chain IDs:G, H
Chain Length:7
Number of Molecules:2
Biological Source:Microcystis aeruginosa
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MAA G ALA N-METHYL-L-ALANINE
MSE A MET SELENOMETHIONINE
Peptide-like Molecules
PRD_001031
Primary Citation
Structure of the Ca(2+)-dependent PP2A heterotrimer and insights into Cdc6 dephosphorylation.
Cell Res. 23 931 946 (2013)
PMID: 23752926 DOI: 10.1038/cr.2013.77

Abstact

The B″/PR72 family of protein phosphatase 2A (PP2A) is an important PP2A family involved in diverse cellular processes, and uniquely regulated by calcium binding to the regulatory subunit. The PR70 subunit in this family interacts with cell division control 6 (Cdc6), a cell cycle regulator important for control of DNA replication. Here, we report crystal structures of the isolated PR72 and the trimeric PR70 holoenzyme at a resolution of 2.1 and 2.4 Å, respectively, and in vitro characterization of Cdc6 dephosphorylation. The holoenzyme structure reveals that one of the PR70 calcium-binding motifs directly contacts the scaffold subunit, resulting in the most compact scaffold subunit conformation among all PP2A holoenzymes. PR70 also binds distinctively to the catalytic subunit near the active site, which is required for PR70 to enhance phosphatase activity toward Cdc6. Our studies provide a structural basis for unique regulation of B″/PR72 holoenzymes by calcium ions, and suggest the mechanisms for precise control of substrate specificity among PP2A holoenzymes.

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Primary Citation of related structures