4ZWP image
Deposition Date 2015-05-19
Release Date 2015-10-14
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4ZWP
Keywords:
Title:
Crystal structure of organophosphate anhydrolase/prolidase mutant Y212F
Biological Source:
Source Organism:
Alteromonas sp. (Taxon ID: 232)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:OPAA organophosphate prolidase anhydrolase
Gene (Uniprot):pepQ
Mutations:Y212F
Chain IDs:A, B
Chain Length:440
Number of Molecules:2
Biological Source:Alteromonas sp.
Primary Citation
Engineering the Organophosphorus Acid Anhydrolase Enzyme for Increased Catalytic Efficiency and Broadened Stereospecificity on Russian VX.
Biochemistry 54 6423 6433 (2015)
PMID: 26418828 DOI: 10.1021/acs.biochem.5b00624

Abstact

The enzyme organophosphorus acid anhydrolase (OPAA), from Alteromonas sp. JD6.5, has been shown to rapidly catalyze the hydrolysis of a number of toxic organophosphorus compounds, including several G-type chemical nerve agents. The enzyme was cloned into Escherichia coli and can be produced up to approximately 50% of cellular protein. There have been no previous reports of OPAA activity on VR {Russian VX, O-isobutyl S-[2-(diethylamino)ethyl] methylphosphonothioate}, and our studies reported here show that wild-type OPAA has poor catalytic efficacy toward VR. However, via application of a structurally aided protein engineering approach, significant improvements in catalytic efficiency were realized via optimization of the small pocket within the OPAA's substrate-binding site. This optimization involved alterations at only three amino acid sites resulting in a 30-fold increase in catalytic efficiency toward racemic VR, with a strong stereospecificity toward the P(+) enantiomer. X-ray structures of this mutant as well as one of its predecessors provide potential structural rationales for their effect on the OPAA active site. Additionally, a fourth mutation at a site near the small pocket was found to relax the stereospecificity of the OPAA enzyme. Thus, it allows the altered enzyme to effectively process both VR enantiomers and should be a useful genetic background in which to seek further improvements in OPAA VR activity.

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Primary Citation of related structures