4ZTO image
Deposition Date 2015-05-14
Release Date 2015-08-19
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4ZTO
Keywords:
Title:
Fab/epitope complex structure of rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RABBIT MONOCLONAL ANTIBODY R53 FAB HEAVY CHAIN
Chain IDs:B (auth: H), E (auth: I)
Chain Length:223
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:RABBIT MONOCLONAL ANTIBODY R53 FAB LIGHT CHAIN
Chain IDs:A (auth: L), D (auth: M)
Chain Length:216
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Epitope of rabbit monoclonal antibody R53
Chain IDs:C (auth: P), F (auth: Q)
Chain Length:15
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Primary Citation
Structural analysis of a novel rabbit monoclonal antibody R53 targeting an epitope in HIV-1 gp120 C4 region critical for receptor and co-receptor binding.
Emerg Microbes Infect 4 e44 e44 (2015)
PMID: 26251831 DOI: 10.1038/emi.2015.44

Abstact

The fourth conserved region (C4) in the HIV-1 envelope glycoprotein (Env) gp120 is a structural element that is important for its function, as it binds to both the receptor CD4 and the co-receptor CCR5/CXCR4. It has long been known that this region is highly immunogenic and that it harbors B-cell as well as T-cell epitopes. It is the target of a number of antibodies in animal studies, which are called CD4-blockers. However, the mechanism by which the virus shields itself from such antibody responses is not known. Here, we determined the crystal structure of R53 in complex with its epitope peptide using a novel anti-C4 rabbit monoclonal antibody R53. Our data show that although the epitope of R53 covers a highly conserved sequence (433)AMYAPPI(439), it is not available in the gp120 trimer and in the CD4-bound conformation. Our results suggest a masking mechanism to explain how HIV-1 protects this critical region from the human immune system.

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