4ZPT image
Deposition Date 2015-05-08
Release Date 2015-10-21
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4ZPT
Title:
Structure of MERS-Coronavirus Spike Receptor-binding Domain (England1 Strain) in Complex with Vaccine-Elicited Murine Neutralizing Antibody D12 (Crystal Form 1)
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:D12 Fab Heavy chain
Chain IDs:A, D (auth: H)
Chain Length:216
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:D12 Fab Light chain
Chain IDs:B, F (auth: L)
Chain Length:214
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:C (auth: R), E (auth: S)
Chain Length:208
Number of Molecules:2
Biological Source:Human coronavirus EMC (isolate United Kingdom/H123990006/2012)
Ligand Molecules
Primary Citation
Evaluation of candidate vaccine approaches for MERS-CoV
Nat Commun 6 7712 ? (2015)
PMID: 26218507 DOI: 10.1038/ncomms8712

Abstact

The emergence of Middle East respiratory syndrome coronavirus (MERS-CoV) as a cause of severe respiratory disease highlights the need for effective approaches to CoV vaccine development. Efforts focused solely on the receptor-binding domain (RBD) of the viral Spike (S) glycoprotein may not optimize neutralizing antibody (NAb) responses. Here we show that immunogens based on full-length S DNA and S1 subunit protein elicit robust serum-neutralizing activity against several MERS-CoV strains in mice and non-human primates. Serological analysis and isolation of murine monoclonal antibodies revealed that immunization elicits NAbs to RBD and, non-RBD portions of S1 and S2 subunit. Multiple neutralization mechanisms were demonstrated by solving the atomic structure of a NAb-RBD complex, through sequencing of neutralization escape viruses and by constructing MERS-CoV S variants for serological assays. Immunization of rhesus macaques confers protection against MERS-CoV-induced radiographic pneumonia, as assessed using computerized tomography, supporting this strategy as a promising approach for MERS-CoV vaccine development.

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Protein

Chemical

Disease

Primary Citation of related structures
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