4ZM4 image
Deposition Date 2015-05-02
Release Date 2015-10-14
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4ZM4
Keywords:
Title:
Complex structure of PctV K276R mutant with PMP and 3-dehydroshkimate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aminotransferase
Gene (Uniprot):pctV
Mutagens:K276R
Chain IDs:A, B, C, D, E, F
Chain Length:447
Number of Molecules:6
Biological Source:Streptomyces pactum
Primary Citation
Mechanism-Based Trapping of the Quinonoid Intermediate by Using the K276R Mutant of PLP-Dependent 3-Aminobenzoate Synthase PctV in the Biosynthesis of Pactamycin.
Chembiochem 16 2484 2490 (2015)
PMID: 26426567 DOI: 10.1002/cbic.201500426

Abstact

Mutational analysis of the pyridoxal 5'-phosphate (PLP)-dependent enzyme PctV was carried out to elucidate the multi-step reaction mechanism for the formation of 3-aminobenzoate (3-ABA) from 3-dehydroshikimate (3-DSA). Introduction of mutation K276R led to the accumulation of a quinonoid intermediate with an absorption maximum at 580 nm after the reaction of pyridoxamine 5'-phosphate (PMP) with 3-DSA. The chemical structure of this intermediate was supported by X-ray crystallographic analysis of the complex formed between the K276R mutant and the quinonoid intermediate. These results clearly show that a quinonoid intermediate is involved in the formation of 3-ABA. They also indicate that Lys276 (in the active site of PctV) plays multiple roles, including acid/base catalysis during the dehydration reaction of the quinonoid intermediate.

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Primary Citation of related structures