4ZLT image
Deposition Date 2015-05-01
Release Date 2015-11-18
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4ZLT
Title:
Crystal structure of viral chemokine binding protein R17 in complex with CCL3
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative uncharacterized protein
Gene (Uniprot):RHVP-L.R17, RHVP.R17
Mutations:K333D, R335E, R336E, K337D
Chain IDs:A (auth: B), B (auth: A)
Chain Length:420
Number of Molecules:2
Biological Source:Cricetid herpesvirus 2
Polymer Type:polypeptide(L)
Molecule:C-C motif chemokine 3
Gene (Uniprot):Ccl3
Mutations:D27A
Chain IDs:C (auth: F), D (auth: L)
Chain Length:70
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Parallel Evolution of Chemokine Binding by Structurally Related Herpesvirus Decoy Receptors.
Structure 24 57 69 (2016)
PMID: 26671708 DOI: 10.1016/j.str.2015.10.018

Abstact

A wide variety of pathogens targets chemokine signaling networks in order to disrupt host immune surveillance and defense. Here, we report a structural and mutational analysis of rodent herpesvirus Peru encoded R17, a potent chemokine inhibitor that sequesters CC and C chemokines with high affinity. R17 consists of a pair of β-sandwich domains linked together by a bridging sheet, which form an acidic binding cleft for the chemokine CCL3 on the opposite face of a basic surface cluster that binds glycosaminoglycans. R17 promiscuously engages chemokines primarily through the same N-loop determinants used for host receptor recognition while residues located in the chemokine 40s loop drive kinetically stable complex formation. The core fold adopted by R17 is unexpectedly similar to that of the M3 chemokine decoy receptor encoded by MHV-68, although, strikingly, neither the location of ligand engagement nor the stoichiometry of binding is conserved, suggesting that their functions evolved independently.

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Primary Citation of related structures