4ZL5 image
Entry Detail
PDB ID:
4ZL5
Keywords:
Title:
Crystal structure of the PmFTN variant E44H soaked in iron (45 min)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-05-01
Release Date:
2015-09-30
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 4 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ferritin
Mutations:E44H
Chain IDs:A (auth: B), B (auth: A), C, D, E, F
Chain Length:169
Number of Molecules:6
Biological Source:Pseudo-nitzschia multiseries
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
YCM A CYS modified residue
Ligand Molecules
Primary Citation
A Diatom Ferritin Optimized for Iron Oxidation but Not Iron Storage.
J.Biol.Chem. 290 28416 28427 (2015)
PMID: 26396187 DOI: 10.1074/jbc.M115.669713

Abstact

Ferritin from the marine pennate diatom Pseudo-nitzschia multiseries (PmFTN) plays a key role in sustaining growth in iron-limited ocean environments. The di-iron catalytic ferroxidase center of PmFTN (sites A and B) has a nearby third iron site (site C) in an arrangement typically observed in prokaryotic ferritins. Here we demonstrate that Glu-44, a site C ligand, and Glu-130, a residue that bridges iron bound at sites B and C, limit the rate of post-oxidation reorganization of iron coordination and the rate at which Fe(3+) exits the ferroxidase center for storage within the mineral core. The latter, in particular, severely limits the overall rate of iron mineralization. Thus, the diatom ferritin is optimized for initial Fe(2+) oxidation but not for mineralization, pointing to a role for this protein in buffering iron availability and facilitating iron-sparing rather than only long-term iron storage.

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Primary Citation of related structures