ISDA

Deposition Date 2015-04-30

Release Date 2016-03-02

Last Version Date 2024-01-10

Entry Detail

PDB ID:

4ZKL

Keywords:

HYDROLASE

Title:

Crystal structure of human histidine triad nucleotide-binding protein 1 (hHINT1) complexed with JB419 (AP4A analog)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.34 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 1 21 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histidine triad nucleotide-binding protein 1
Gene (Uniprot):HINT1
Chain IDs:A, B, C, D
Chain Length:126
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P49773 Pfam ID:PF01230

Ligand Molecules

AMP

JB6

Primary Citation

Crystallographic studies of the complex of human HINT1 protein with a non-hydrolyzable analog of Ap4A.

Dolot, R, Kaczmarek, R, Seda, A, Krakowiak, A, Baraniak, J, Nawrot, B.Show

Int.J.Biol.Macromol. 87 62 69 (2016)

PMID: 26905466 DOI: 10.1016/j.ijbiomac.2016.02.047

Abstact

Histidine triad nucleotide-binding protein 1 (HINT1) represents the most ancient and widespread branch in the histidine triad proteins superfamily. HINT1 plays an important role in various biological processes, and it has been found in many species. Here, we report the first structure (at a 2.34Å resolution) of a complex of human HINT1 with a non-hydrolyzable analog of an Ap4A dinucleotide, containing bis-phosphorothioated glycerol mimicking a polyphosphate chain, obtained from a primitive monoclinic space group P21 crystal. In addition, the apo form of hHINT1 at the space group P21 refined to 1.92Å is reported for comparative studies.

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Protein

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Disease

Primary Citation of related structures