4ZKC image
Entry Detail
PDB ID:
4ZKC
Title:
The chemokine binding protein of orf virus complexed with CCL7
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-04-30
Release Date:
2015-07-08
Method Details:
Experimental Method:
Resolution:
3.15 Å
R-Value Free:
0.32
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chemokine binding protein
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:Orf virus (strain NZ2)
Polymer Type:polypeptide(L)
Description:C-C motif chemokine 7
Chain IDs:B
Chain Length:82
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
NAG C NAG -D
Ligand Molecules
Primary Citation
Structures of Orf Virus Chemokine Binding Protein in Complex with Host Chemokines Reveal Clues to Broad Binding Specificity.
Structure 23 1199 1213 (2015)
PMID: 26095031 DOI: 10.1016/j.str.2015.04.023

Abstact

The chemokine binding protein (CKBP) from orf virus (ORFV) binds with high affinity to chemokines from three classes, C, CC, and CXC, making it unique among poxvirus CKBPs described to date. We present its crystal structure alone and in complex with three CC chemokines, CCL2, CCL3, and CCL7. ORFV CKBP possesses a β-sandwich fold that is electrostatically and sterically complementary to its binding partners. Chemokines bind primarily through interactions involving the N-terminal loop and a hydrophobic recess on the ORFV CKBP β-sheet II surface, and largely polar interactions between the chemokine 20s loop and a negatively charged surface groove located at one end of the CKBP β-sheet II surface. ORFV CKBP interacts with leukocyte receptor and glycosaminoglycan binding sites found on the surface of bound chemokines. SEC-MALLS and chromatographic evidence is presented supporting that ORFV CKBP is a dimer in solution over a broad range of protein concentrations.

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Primary Citation of related structures