4ZK7 image
Entry Detail
PDB ID:
4ZK7
Keywords:
Title:
Crystal structure of rescued two-component self-assembling tetrahedral cage T33-31
Biological Source:
PDB Version:
Deposition Date:
2015-04-30
Release Date:
2015-07-29
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chorismate mutase
Mutations:E17A, H20L, Q21A, R24I, Q64L, R109N
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:130
Number of Molecules:12
Biological Source:Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Polymer Type:polypeptide(L)
Description:Divalent-cation tolerance protein CutA
Mutations:E12A, E13L, R16V, T17K, K20H, W43E, Q44E, E46S, E49S, Q51H, H62D, A73E, T78E
Chain IDs:M, N, O, P, Q, R, S, T, U, V, W, X
Chain Length:111
Number of Molecules:12
Biological Source:Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Ligand Molecules
Primary Citation
Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression.
Protein Sci. 24 1695 1701 (2015)
PMID: 26174163 DOI: 10.1002/pro.2748

Abstact

We recently reported the development of a computational method for the design of coassembling multicomponent protein nanomaterials. While four such materials were validated at high-resolution by X-ray crystallography, low yield of soluble protein prevented X-ray structure determination of a fifth designed material, T33-09. Here we report the design and crystal structure of T33-31, a variant of T33-09 with improved soluble yield resulting from redesign efforts focused on mutating solvent-exposed side chains to charged amino acids. The structure is found to match the computational design model with atomic-level accuracy, providing further validation of the design approach and demonstrating a simple and potentially general means of improving the yield of designed protein nanomaterials.

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