4ZIR image
Deposition Date 2015-04-28
Release Date 2015-06-10
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4ZIR
Title:
Crystal structure of EcfAA' heterodimer bound to AMPPNP
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter ATP-binding protein EcfA2
Gene (Uniprot):ecfA2
Chain IDs:A
Chain Length:267
Number of Molecules:1
Biological Source:Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter ATP-binding protein EcfA1
Gene (Uniprot):ecfA1
Mutations:K2R, T4E, E53A, E55A, E125A, K126A, E127A
Chain IDs:B
Chain Length:268
Number of Molecules:1
Biological Source:Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Primary Citation
ATP binding drives substrate capture in an ECF transporter by a release-and-catch mechanism.
Nat.Struct.Mol.Biol. 22 565 571 (2015)
PMID: 26052893 DOI: 10.1038/nsmb.3040

Abstact

ECF transporters are a family of active transporters for vitamins. They are composed of four subunits: a membrane-embedded substrate-binding subunit (EcfS), a transmembrane coupling subunit (EcfT) and two ATP-binding-cassette ATPases (EcfA and EcfA'). We have investigated the mechanism of the ECF transporter for riboflavin from the pathogen Listeria monocytogenes, LmECF-RibU. Using structural and biochemical approaches, we found that ATP binding to the EcfAA' ATPases drives a conformational change that dissociates the S subunit from the EcfAA'T ECF module. Upon release from the ECF module, the RibU S subunit then binds the riboflavin transport substrate. We also find that S subunits for distinct substrates compete for the ATP-bound state of the ECF module. Our results explain how ECF transporters capture the transport substrate and reproduce the in vivo observations on S-subunit competition for which the family was named.

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Primary Citation of related structures