4ZFZ image
Entry Detail
PDB ID:
4ZFZ
Keywords:
Title:
Crystal structure of rhesus macaque MHC class I molecule Mamu-B*098 complexed with myristoylated 5-mer lipopeptide derived from SIV Nef protein
Biological Source:
PDB Version:
Deposition Date:
2015-04-22
Release Date:
2016-01-13
Method Details:
Experimental Method:
Resolution:
1.76 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Major histocompatibility complex class I
Chain IDs:A, D, G, J
Chain Length:277
Number of Molecules:4
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:Beta-2-microglobulin
Chain IDs:B, E, H, K
Chain Length:100
Number of Molecules:4
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:5-mer lipopeptide from Protein Nef
Chain IDs:C, F, I, L
Chain Length:5
Number of Molecules:4
Biological Source:Simian immunodeficiency virus
Primary Citation
Crystal structure of the N-myristoylated lipopeptide-bound MHC class I complex
Nat Commun 7 10356 10356 (2016)
PMID: 26758274 DOI: 10.1038/ncomms10356

Abstact

The covalent conjugation of a 14-carbon saturated fatty acid (myristic acid) to the amino-terminal glycine residue is critical for some viral proteins to function. This protein lipidation modification, termed N-myristoylation, is targeted by host cytotoxic T lymphocytes (CTLs) that specifically recognize N-myristoylated short peptides; however, the molecular mechanisms underlying lipopeptide antigen (Ag) presentation remain elusive. Here we show that a primate major histocompatibility complex (MHC) class I-encoded protein is capable of binding N-myristoylated 5-mer peptides and presenting them to specific CTLs. A high-resolution X-ray crystallographic analysis of the MHC class I:lipopeptide complex reveals an Ag-binding groove that is elaborately constructed to bind N-myristoylated short peptides rather than prototypic 9-mer peptides. The identification of lipopeptide-specific, MHC class I-restricted CTLs indicates that the widely accepted concept of MHC class I-mediated presentation of long peptides to CTLs may need some modifications to incorporate a novel MHC class I function of lipopeptide Ag presentation.

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