4ZCE image
Deposition Date 2015-04-15
Release Date 2015-11-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4ZCE
Keywords:
Title:
Crystal Structure of the dust mite allergen Der p 23 from Dermatophagoides pteronyssinus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dust mite allergen
Chain IDs:A, B
Chain Length:50
Number of Molecules:2
Biological Source:Dermatophagoides pteronyssinus
Ligand Molecules
Primary Citation
Serological, genomic and structural analyses of the major mite allergen Der p 23.
Clin Exp Allergy 46 365 376 (2016)
PMID: 26602749 DOI: 10.1111/cea.12680

Abstact

BACKGROUND Der p 23 was recently identified in a European population as a major allergen and potentially a chitin binding protein. OBJECTIVE This study sought to assess the importance of Der p 23 among other Dermatophagoides allergens in a North American population and to determine the structure for functional characterization. METHODS IgE binding to Der p 23, Der p 1, Der p 2, Der p 5, Der p 7 and Der p 8 was measured by ELISA. RNA-seq data from D. pteronyssinus were compared as estimates of allergen expression levels. The structure was analysed by X-ray crystallography and NMR. RESULTS Despite a high prevalence of Der p 23, (75% vs. 87% and 79% for Der p 1 and Der p 2, respectively), the anti-Der p 23 IgE levels were relatively low. The patient response to the 6 allergens tested was variable (n = 47), but on average anti-Der p 1 and anti-Der p 2 together accounted for 85% of the specific IgE. In terms of abundance, the RNA expression level of Der p 23 is the lowest of the major allergens, thirty fold less than Der p 1 and sevenfold less than Der p 2. The structure of Der p 23 is a small, globular protein stabilized by two disulphide bonds, which is structurally related to allergens such as Blo t 12 that contain carbohydrate binding domains that bind chitin. Functional assays failed to confirm chitin binding by Der p 23. CONCLUSIONS AND CLINICAL RELEVANCE Der p 23 accounts for a small percentage of the IgE response to mite allergens, which is dominated by Der p 1 and Der p 2. The prevalence and amount of specific IgE to Der p 23 and Der p 2 are disproportionately high compared to the expression of other Dermatophagoides allergens.

Legend

Protein

Chemical

Disease

Primary Citation of related structures