4Z9I image
Deposition Date 2015-04-10
Release Date 2016-07-20
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4Z9I
Keywords:
Title:
Asp-TarS from E. coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.57 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methyl-accepting chemotaxis protein II
Gene (Uniprot):tar
Chain IDs:A, B
Chain Length:196
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
Structural Analysis of the Ligand-Binding Domain of the Aspartate Receptor Tar from Escherichia coli
Biochemistry 55 3708 3713 (2016)
PMID: 27292793 DOI: 10.1021/acs.biochem.6b00160

Abstact

The Escherichia coli cell-surface aspartate receptor Tar mediates bacterial chemotaxis toward an attractant, aspartate (Asp), and away from a repellent, Ni(2+). These signals are transmitted from the extracellular region of Tar to the cytoplasmic region via the transmembrane domain. The mechanism by which extracellular signals are transmitted into the cell through conformational changes in Tar is predicted to involve a piston displacement of one of the α4 helices of the homodimer. To understand the molecular mechanisms underlying the induction of Tar activity by an attractant, the three-dimensional structures of the E. coli Tar periplasmic domain with and without bound aspartate, Asp-Tar and apo-Tar, respectively, were determined. Of the two ligand-binding sites, only one site was occupied, and it clearly showed the electron density of an aspartate. The slight changes in conformation and the electrostatic surface potential around the aspartate-binding site were observed. In addition, the presence of an aspartate stabilized residues Phe-150' and Arg-73. A pistonlike displacement of helix α4b' was also induced by aspartate binding as predicted by the piston model. Taken together, these small changes might be related to the induction of Tar activity and might disturb binding of the second aspartate to the second binding site in E. coli.

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Primary Citation of related structures