4Z87 image
Deposition Date 2015-04-08
Release Date 2015-11-25
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4Z87
Keywords:
Title:
Structure of the IMP dehydrogenase from Ashbya gossypii bound to GDP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Inosine-5'-monophosphate dehydrogenase
Gene (Uniprot):AGOS_AER117W
Chain IDs:A, B, C, D
Chain Length:525
Number of Molecules:4
Biological Source:Ashbya gossypii (strain ATCC 10895)
Primary Citation
Guanine nucleotide binding to the Bateman domain mediates the allosteric inhibition of eukaryotic IMP dehydrogenases.
Nat Commun 6 8923 8923 (2015)
PMID: 26558346 DOI: 10.1038/ncomms9923

Abstact

Inosine-5'-monophosphate dehydrogenase (IMPDH) plays key roles in purine nucleotide metabolism and cell proliferation. Although IMPDH is a widely studied therapeutic target, there is limited information about its physiological regulation. Using Ashbya gossypii as a model, we describe the molecular mechanism and the structural basis for the allosteric regulation of IMPDH by guanine nucleotides. We report that GTP and GDP bind to the regulatory Bateman domain, inducing octamers with compromised catalytic activity. Our data suggest that eukaryotic and prokaryotic IMPDHs might have developed different regulatory mechanisms, with GTP/GDP inhibiting only eukaryotic IMPDHs. Interestingly, mutations associated with human retinopathies map into the guanine nucleotide-binding sites including a previously undescribed non-canonical site and disrupt allosteric inhibition. Together, our results shed light on the mechanisms of the allosteric regulation of enzymes mediated by Bateman domains and provide a molecular basis for certain retinopathies, opening the door to new therapeutic approaches.

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