4Z7U image
Entry Detail
PDB ID:
4Z7U
Keywords:
Title:
S13 complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2015-04-08
Release Date:
2015-06-03
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MHC class II HLA-DQ-alpha chain
Chain IDs:A, C
Chain Length:192
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:MHC class II HLA-DQ-beta-1
Chain IDs:B, D
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL RECEPTOR, S13 ALPHA CHAIN
Chain IDs:E, G
Chain Length:203
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T-CELL RECEPTOR, S13 BETA CHAIN
Chain IDs:F, H
Chain Length:245
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:deamidated DQ8-glia-alpha1 peptide
Chain IDs:I, J
Chain Length:18
Number of Molecules:2
Biological Source:Triticum aestivum
Ligand Molecules
Primary Citation
Determinants of Gliadin-Specific T Cell Selection in Celiac Disease.
J Immunol. 194 6112 6122 (2015)
PMID: 25948817 DOI: 10.4049/jimmunol.1500161

Abstact

In HLA-DQ8-associated celiac disease (CD), the pathogenic T cell response is directed toward an immunodominant α-gliadin-derived peptide (DQ8-glia-α1). However, our knowledge of TCR gene usage within the primary intestinal tissue of HLA-DQ8 (+) CD patients is limited. We identified two populations of HLA-DQ8-glia-α1 tetramer(+) CD4(+) T cells that were essentially undetectable in biopsy samples from patients on a gluten-free diet but expanded rapidly and specifically after antigenic stimulation. Distinguished by expression of TRBV9, both T cell populations displayed biased clonotypic repertoires and reacted similarly against HLA-DQ8-glia-α1. In particular, TRBV9 paired most often with TRAV26-2, whereas the majority of TRBV9(-) TCRs used TRBV6-1 with no clear TRAV gene preference. Strikingly, both tetramer(+)/TRBV9(+) and tetramer(+)/TRBV9(-) T cells possessed a non-germline-encoded arginine residue in their CDR3α and CDR3β loops, respectively. Comparison of the crystal structures of three TRBV9(+) TCRs and a TRBV9(-) TCR revealed that, as a result of distinct TCR docking modes, the HLA-DQ8-glia-α1 contacts mediated by the CDR3-encoded arginine were almost identical between TRBV9(+) and TRBV9(-) TCRs. In all cases, this interaction centered on two hydrogen bonds with a specific serine residue in the bound peptide. Replacement of serine with alanine at this position abrogated TRBV9(+) and TRBV9(-) clonal T cell proliferation in response to HLA-DQ8-glia-α1. Gluten-specific memory CD4(+) T cells with structurally and functionally conserved TCRs therefore predominate in the disease-affected tissue of patients with HLA-DQ8-mediated CD.

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Protein

Chemical

Disease

Primary Citation of related structures