4Z5R image
Deposition Date 2015-04-02
Release Date 2015-07-08
Last Version Date 2024-10-09
Entry Detail
PDB ID:
4Z5R
Title:
Rontalizumab Fab bound to Interferon-a2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Interferon alpha-2
Gene (Uniprot):IFNA2
Chain IDs:A (auth: D), D (auth: E), G (auth: F), J (auth: G), M (auth: H), P (auth: I), S (auth: X), V (auth: N)
Chain Length:165
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:anti-IFN-a antibody rontalizumab light chain
Chain IDs:B (auth: J), E (auth: L), H (auth: V), K (auth: P), N (auth: R), Q (auth: T), T (auth: Y), W (auth: A)
Chain Length:218
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:anti-IFN-a antibody rontalizumab heavy chain modules VH and CH1 (Fab)
Chain IDs:C (auth: K), F (auth: M), I (auth: W), L (auth: Q), O (auth: S), R (auth: U), U (auth: Z), X (auth: B)
Chain Length:225
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis of the broadly neutralizing anti-interferon-alpha antibody rontalizumab.
Protein Sci. 24 1440 1450 (2015)
PMID: 26099203 DOI: 10.1002/pro.2729

Abstact

Interferons-alpha (IFN-α) are the expressed gene products comprising thirteen type I interferons with protein pairwise sequence similarities in the 77-96% range. Three other widely expressed human type I interferons, IFN-β, IFN-κ and IFN-ω have sequences 29-33%, 29-32% and 56-60% similar to the IFN-αs, respectively. Type I interferons act on immune cells by producing subtly different immune-modulatory effects upon binding to the extracellular domains of a heterodimeric cell-surface receptor composed of IFNAR1 and IFNAR2, most notably anti-viral effects. IFN-α has been used to treat infection by hepatitis-virus type C (HCV) and a correlation between hyperactivity of IFN-α-induced signaling and systemic lupus erythematosis (SLE), or lupus, has been noted. Anti-IFN-α antibodies including rontalizumab have been under clinical study for the treatment of lupus. To better understand the rontalizumab mechanism of action and specificity, we determined the X-ray crystal structure of the Fab fragment of rontalizumab bound to human IFN-α2 at 3Å resolution and find substantial overlap of the antibody and IFNA2 epitopes on IFN-α2.

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Protein

Chemical

Disease

Primary Citation of related structures
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