4Z3Y image
Entry Detail
PDB ID:
4Z3Y
Keywords:
Title:
Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with Benzoyl-CoA
Biological Source:
PDB Version:
Deposition Date:
2015-04-01
Release Date:
2015-07-01
Method Details:
Experimental Method:
Resolution:
2.36 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Benzoyl-CoA reductase, putative
Chain IDs:A, B, C, D
Chain Length:653
Number of Molecules:4
Biological Source:Geobacter metallireducens GS-15
Polymer Type:polypeptide(L)
Description:Iron-sulfur cluster-binding oxidoreductase, putative benzoyl-CoA reductase electron transfer protein
Chain IDs:E, F, G, H
Chain Length:179
Number of Molecules:4
Biological Source:Geobacter metallireducens GS-15
Primary Citation
Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol. 11 586 591 (2015)
PMID: 26120796 DOI: 10.1038/nchembio.1849

Abstact

In chemical synthesis, the widely used Birch reduction of aromatic compounds to cyclic dienes requires alkali metals in ammonia as extremely low-potential electron donors. An analogous reaction is catalyzed by benzoyl-coenzyme A reductases (BCRs) that have a key role in the globally important bacterial degradation of aromatic compounds at anoxic sites. Because of the lack of structural information, the catalytic mechanism of enzymatic benzene ring reduction remained obscure. Here, we present the structural characterization of a dearomatizing BCR containing an unprecedented tungsten cofactor that transfers electrons to the benzene ring in an aprotic cavity. Substrate binding induces proton transfer from the bulk solvent to the active site by expelling a Zn(2+) that is crucial for active site encapsulation. Our results shed light on the structural basis of an electron transfer process at the negative redox potential limit in biology. They open the door for biological or biomimetic alternatives to a basic chemical synthetic tool.

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