4Z2M image
Deposition Date 2015-03-30
Release Date 2016-03-09
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4Z2M
Title:
Crystal structure of human SPT16 Mid-AID/H3-H4 tetramer FACT Histone complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:FACT complex subunit SPT16
Gene (Uniprot):SUPT16H
Chain IDs:A (auth: B)
Chain Length:287
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:B (auth: G), D (auth: I)
Chain Length:102
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:C (auth: H), E (auth: J)
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Integrated molecular mechanism directing nucleosome reorganization by human FACT.
Genes Dev. 30 673 686 (2016)
PMID: 26966247 DOI: 10.1101/gad.274183.115

Abstact

Facilitates chromatin transcription (FACT) plays essential roles in chromatin remodeling during DNA transcription, replication, and repair. Our structural and biochemical studies of human FACT-histone interactions present precise views of nucleosome reorganization, conducted by the FACT-SPT16 (suppressor of Ty 16) Mid domain and its adjacent acidic AID segment. AID accesses the H2B N-terminal basic region exposed by partial unwrapping of the nucleosomal DNA, thereby triggering the invasion of FACT into the nucleosome. The crystal structure of the Mid domain complexed with an H3-H4 tetramer exhibits two separate contact sites; the Mid domain forms a novel intermolecular β structure with H4. At the other site, the Mid-H2A steric collision on the H2A-docking surface of the H3-H4 tetramer within the nucleosome induces H2A-H2B displacement. This integrated mechanism results in disrupting the H3 αN helix, which is essential for retaining the nucleosomal DNA ends, and hence facilitates DNA stripping from histone.

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Primary Citation of related structures