4Z2L image
Entry Detail
PDB ID:
4Z2L
Title:
Serratia marcescens Chitinase B complexed with macrolide inhibitor 33
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2015-03-30
Release Date:
2015-07-01
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chitinase B
Chain IDs:A
Chain Length:503
Number of Molecules:1
Biological Source:Serratia marcescens
Primary Citation
Creation of Customized Bioactivity within a 14-Membered Macrolide Scaffold: Design, Synthesis, and Biological Evaluation Using a Family-18 Chitinase
J.Med.Chem. 58 4984 4997 (2015)
PMID: 26030312 DOI: 10.1021/acs.jmedchem.5b00175

Abstact

Argifin, a 17-membered pentapeptide, inhibits chitinase. As argifin has properties that render it unsuitable as a drug development candidate, we devised a mechanism to create the structural component of argifin that bestows the chitinase inhibition and introduce it into a 14-membered macrolide scaffold. Here we describe (1) the designed macrolide, which exhibits ∼200-fold more potent chitinase inhibition than argifin, (2) the binding modes of the macrolide with Serratia marcescens chitinase B, and (3) the computed analysis explaining the reason for derivatives displaying increased inhibition compared to argifin, the macrolide aglycone displaying inhibition in a nanomolar range. This promises a class of chitinase inhibitors with novel skeletons, providing innovative insight for drug design and the use of macrolides as adaptable, flexible templates for use in drug discovery research and development.

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