4Z0L image
Deposition Date 2015-03-26
Release Date 2015-06-10
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4Z0L
Title:
The murine cyclooxygenase-2 complexed with a nido-dicarbaborate-containing indomethacin derivative
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prostaglandin G/H synthase 2
Gene (Uniprot):Ptgs2
Chain IDs:A, B, C, D
Chain Length:587
Number of Molecules:4
Biological Source:Mus musculus
Primary Citation
nido-Dicarbaborate Induces Potent and Selective Inhibition of Cyclooxygenase-2.
Chemmedchem 11 175 178 (2016)
PMID: 26088701 DOI: 10.1002/cmdc.201500199

Abstact

Carbaboranes are increasingly studied as pharmacophores, particularly as replacements for aromatic systems. However, especially ortho-carbaborane is prone to degradation of the cluster, which hampers biological application. This study demonstrates that deboronation of the cluster may not only lead to a more active analogue, but can also improve the solubility and stability of a carbaborane-containing inhibitor. Notably, introduction of a nido-dicarbaborate cluster into the cyclooxygenase (COX) inhibitor indomethacin results in remarkably increased inhibitory potency and selectivity for COX-2 relative to the respective phenyl analogue. The first crystal structure of a carbaborane-containing inhibitor bound to COX-2 further reveals a novel binding mode for the inhibitor that is strikingly different from that of indomethacin. These results indicate that nido-dicarbaborate is a promising pharmacophore that exhibits properties which are also highly beneficial for its introduction into other inhibitor classes.

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Primary Citation of related structures