4YWZ image
Deposition Date 2015-03-21
Release Date 2016-03-30
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4YWZ
Keywords:
Title:
Crystal structure of the extracellular receptor domain of the essential sensor kinase WalK from Staphylococcus aureus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sensor protein kinase WalK
Mutations:A86M
Chain IDs:A, B
Chain Length:152
Number of Molecules:2
Biological Source:Staphylococcus aureus
Primary Citation
Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus.
Nat Commun 7 11000 11000 (2016)
PMID: 26987594 DOI: 10.1038/ncomms11000

Abstact

Most low GC Gram-positive bacteria possess an essential walKR two-component system (TCS) for signal transduction involved in regulating cell wall homoeostasis. Despite the well-established intracellular regulatory mechanism, the role of this TCS in extracellular signal recognition and factors that modulate the activity of this TCS remain largely unknown. Here we identify the extracellular receptor of the kinase 'WalK' (erWalK) as a key hub for bridging extracellular signal input and intracellular kinase activity modulation in Staphylococcus aureus. Characterization of the crystal structure of erWalK revealed a canonical Per-Arnt-Sim (PAS) domain for signal sensing. Single amino-acid mutation of potential signal-transduction residues resulted in severely impaired function of WalKR. A small molecule derived from structure-based virtual screening against erWalK is capable of selectively activating the walKR TCS. The molecular level characterization of erWalK will not only facilitate exploration of natural signal(s) but also provide a template for rational design of erWalK inhibitors.

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