4YMM image
Deposition Date 2015-03-06
Release Date 2016-03-09
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4YMM
Keywords:
TRANSFERASE/DNA
Title:
Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
4YMM validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA polymerase beta
Gene (Uniprot):POLB
Chain IDs:A
Chain Length:335
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P06746 Pfam ID:PF14792, PF14791, PF14716, PF10391 EC:2.7.7.7
Polymer Type:polydeoxyribonucleotide
Molecule:DNA 5-mer (dn-primer)
Chain IDs:D
Chain Length:5
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA 10-mer (up-primer)
Chain IDs:C (auth: P)
Chain Length:10
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA 16-mer (template)
Chain IDs:B (auth: T)
Chain Length:16
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
NA
Primary Citation
Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA
To Be Published ? ? ? (?)
Primary Citation of related structures
4YMN
4YMO
4YN4