4YK8 image
Deposition Date 2015-03-04
Release Date 2015-06-03
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4YK8
Title:
Crystal structure of the Atg101-Atg13 complex from fission yeast
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Meiotically up-regulated gene 66 protein
Gene (Uniprot):atg101
Chain IDs:A
Chain Length:187
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Polymer Type:polypeptide(L)
Molecule:Autophagy protein 13
Gene (Uniprot):atg13
Chain IDs:B
Chain Length:242
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Ligand Molecules
Primary Citation
Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation.
Nat.Struct.Mol.Biol. 22 572 580 (2015)
PMID: 26030876 DOI: 10.1038/nsmb.3036

Abstact

Atg101 is an essential component of the autophagy-initiating ULK complex in higher eukaryotes, but it is absent from the functionally equivalent Atg1 complex in budding yeast. Here, we report the crystal structure of the fission yeast Atg101-Atg13 complex. Atg101 has a Hop1, Rev7 and Mad2 (HORMA) architecture similar to that of Atg13. Mad2 HORMA has two distinct conformations (O-Mad2 and C-Mad2), and, intriguingly, Atg101 resembles O-Mad2 rather than the C-Mad2-like Atg13. Atg13 HORMA from higher eukaryotes possesses an inherently unstable fold, which is stabilized by Atg101 via interactions analogous to those between O-Mad2 and C-Mad2. Mutational studies revealed that Atg101 is responsible for recruiting downstream factors to the autophagosome-formation site in mammals via a newly identified WF finger. These data define the molecular functions of Atg101, providing a basis for elucidating the molecular mechanisms of mammalian autophagy initiation by the ULK complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures