4YK3 image
Deposition Date 2015-03-03
Release Date 2016-03-09
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4YK3
Keywords:
Title:
Crystal Structure of the BID Domain of BepE from Bartonella henselae
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BepE protein
Chain IDs:A, B, C, D
Chain Length:146
Number of Molecules:4
Biological Source:Bartonella henselae str. Houston-1
Ligand Molecules
Primary Citation
The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook.
Structure 25 203 211 (2017)
PMID: 27889208 DOI: 10.1016/j.str.2016.10.010

Abstact

The BID (Bep intracellular delivery) domain functions as secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Bartonella effector proteins (Beps) during protein transfer into host cells infected by pathogenic Bartonella species. Furthermore, BID domains of Beps have often evolved secondary effector functions within host cells. Here, we provide crystal structures for three representative BID domains and describe a novel conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook. The conserved hydrophobic core provides a rigid scaffold to a surface that, despite a few conserved exposed residues and similarities in charge distribution, displays significant variability. We propose that the genuine function of BID domains as T4S signal may primarily depend on their rigid structure, while the plasticity of their surface may facilitate adaptation to secondary effector functions.

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Primary Citation of related structures