4YIK image
Deposition Date 2015-03-02
Release Date 2015-09-09
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4YIK
Keywords:
HYDROLASE/HYDROLASE INHIBITOR
Title:
Crystal structure of human cytosolic 5'(3')-deoxyribonucleotidase in complex with the inhibitor PB-PVU
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.48 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43 21 2
4YIK validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:5'(3')-deoxyribonucleotidase, mitochondrial
Gene (Uniprot):NT5M
Chain IDs:A
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9NPB1 Pfam ID:PF06941
Ligand Molecules
2O2
GOL
MG
PEG
PO4
TRS
Primary Citation
Structure-based design of a bisphosphonate 5'(3')-deoxyribonucleotidase inhibitor
Medchemcomm 6 1635 1638 (2015)
DOI: 10.1039/C5MD00235D
Primary Citation of related structures
4YIH