4YI9 image
Entry Detail
PDB ID:
4YI9
Title:
Crystal structure of non-myristoylated E153A recoverin at 1.35 A resolution with a sodium ion bound to EF-hand 2 and calcium ion bound to EF-hand 3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-02-28
Release Date:
2015-12-02
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Recoverin
Mutations:E153A
Chain IDs:A
Chain Length:201
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
Crystal Structure of Recoverin with Calcium Ions Bound to Both Functional EF Hands.
Biochemistry 54 7222 7228 (2015)
PMID: 26584024 DOI: 10.1021/acs.biochem.5b01160

Abstact

Recoverin (Rv), a small Ca(2+)-binding protein that inhibits rhodopsin kinase (RK), has four EF hands, two of which are functional (EF2 and EF3). Activation requires Ca(2+) in both EF hands, but crystal structures have never been observed with Ca(2+) ions in both sites; all previous structures have Ca(2+) bound to only EF3. We suspected that this was due to an intermolecular crystal contact between T80 and a surface glutamate (E153) that precluded coordination of a Ca(2+) ion in EF2. We constructed the E153A mutant, determined its X-ray crystal structure to 1.2 Å resolution, and showed that two Ca(2+) ions are bound, one in EF3 and one in EF2. Additionally, several other residues are shown to adopt conformations in the 2Ca(2+) structure not seen previously and not seen in a second structure of the E153A mutant containing Na(+) instead of Ca(2+) in the EF2 site. The side-chain rearrangements in these residues form a 28 Å allosteric cascade along the surface of the protein connecting the Ca(2+)-binding site of EF2 with the active-site pocket responsible for binding RK.

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