4YHD image
Deposition Date 2015-02-27
Release Date 2015-10-21
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4YHD
Keywords:
Title:
Staphylococcal alpha-hemolysin H35A mutant monomer
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-hemolysin
Gene (Uniprot):hly
Mutations:H35A, D208E
Chain IDs:A, B, C, D, E, F (auth: G)
Chain Length:302
Number of Molecules:6
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Structural basis for pore-forming mechanism of staphylococcal alpha-hemolysin
Toxicon 108 226 231 (2015)
PMID: 26428390 DOI: 10.1016/j.toxicon.2015.09.033

Abstact

Staphylococcal α-hemolysin (α-HL) is a β-barrel pore-forming toxin (PFT) expressed by Staphylococcus aureus. α-HL is secreted as a water-soluble monomeric protein, which binds to target membranes and forms membrane-inserted heptameric pores. To explore the pore-forming mechanism of α-HL in detail, we determined the crystal structure of the α-HL monomer and prepore using H35A mutant and W179A/R200A mutant, respectively. Although the overall structure of the monomer was similar to that of other staphylococcal PFTs, a marked difference was observed in the N-terminal amino latch, which bent toward the prestem. Moreover, the prestem was fastened by the cap domain with a key hydrogen bond between Asp45 and Tyr118. Prepore structure showed that the transmembrane region is roughly formed with flexibility, although the upper half of the β-barrel is formed appropriately. Structure comparison among monomer, prepore and pore revealed a series of motions, in which the N-terminal amino latch released upon oligomerization destroys its own key hydrogen bond between Asp45-Tyr118. This action initiated the protrusion of the prestem. Y118F mutant and the N-terminal truncated mutant markedly decreased in the hemolytic activity, indicating the importance of the key hydrogen bond and the N-terminal amino latch on the pore formation. Based on these observations, we proposed a dynamic molecular mechanism of pore formation for α-HL.

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Primary Citation of related structures