4YFI image
Deposition Date 2015-02-25
Release Date 2015-09-23
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4YFI
Title:
TNNI3K complexed with inhibitor 1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase TNNI3K
Gene (Uniprot):TNNI3K
Chain IDs:A, B, C, D
Chain Length:330
Number of Molecules:4
Biological Source:Homo sapiens
[{'entity_id': ['2'], 'name': ['N-methyl-3-(9H-purin-6-ylamino)benzenesulfonamide'], 'comp_id': ['4CW'], 'asym_id': ['E', 'F', 'G', 'H'], 'ndb_seq_num': ['1'], 'pdb_seq_num': ['801'], 'auth_seq_num': ['1'], 'pdb_mon_id': ['4CW'], 'auth_mon_id': ['155'], 'pdb_strand_id': ['A', 'B', 'C', 'D'], 'pdb_ins_code': ['.']}]
Primary Citation
Identification of Purines and 7-Deazapurines as Potent and Selective Type I Inhibitors of Troponin I-Interacting Kinase (TNNI3K).
J.Med.Chem. 58 7431 7448 (2015)
PMID: 26355916 DOI: 10.1021/acs.jmedchem.5b00931

Abstact

A series of cardiac troponin I-interacting kinase (TNNI3K) inhibitors arising from 3-((9H-purin-6-yl)amino)-N-methyl-benzenesulfonamide (1) is disclosed along with fundamental structure-function relationships that delineate the role of each element of 1 for TNNI3K recognition. An X-ray structure of 1 bound to TNNI3K confirmed its Type I binding mode and is used to rationalize the structure-activity relationship and employed to design potent, selective, and orally bioavailable TNNI3K inhibitors. Identification of the 7-deazapurine heterocycle as a superior template (vs purine) and its elaboration by introduction of C4-benzenesulfonamide and C7- and C8-7-deazapurine substituents produced compounds with substantial improvements in potency (>1000-fold), general kinase selectivity (10-fold improvement), and pharmacokinetic properties (>10-fold increase in poDNAUC). Optimal members of the series have properties suitable for use in in vitro and in vivo experiments aimed at elucidating the role of TNNI3K in cardiac biology and serve as leads for developing novel heart failure medicines.

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