4YCI image
Deposition Date 2015-02-20
Release Date 2015-03-04
Last Version Date 2024-10-23
Entry Detail
PDB ID:
4YCI
Keywords:
Title:
non-latent pro-bone morphogenetic protein 9
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bone Morphogenetic Protein 9 Growth Factor Domain
Gene (Uniprot):Gdf2
Chain IDs:A, B
Chain Length:296
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Bone Morphogenetic Protein 9 Prodomain
Gene (Uniprot):GDF2
Chain IDs:C, D
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure of bone morphogenetic protein 9 procomplex.
Proc.Natl.Acad.Sci.USA 112 3710 3715 (2015)
PMID: 25751889 DOI: 10.1073/pnas.1501303112

Abstact

Bone morphogenetic proteins (BMPs) belong to the TGF-β family, whose 33 members regulate multiple aspects of morphogenesis. TGF-β family members are secreted as procomplexes containing a small growth factor dimer associated with two larger prodomains. As isolated procomplexes, some members are latent, whereas most are active; what determines these differences is unknown. Here, studies on pro-BMP structures and binding to receptors lead to insights into mechanisms that regulate latency in the TGF-β family and into the functions of their highly divergent prodomains. The observed open-armed, nonlatent conformation of pro-BMP9 and pro-BMP7 contrasts with the cross-armed, latent conformation of pro-TGF-β1. Despite markedly different arm orientations in pro-BMP and pro-TGF-β, the arm domain of the prodomain can similarly associate with the growth factor, whereas prodomain elements N- and C-terminal to the arm associate differently with the growth factor and may compete with one another to regulate latency and stepwise displacement by type I and II receptors. Sequence conservation suggests that pro-BMP9 can adopt both cross-armed and open-armed conformations. We propose that interactors in the matrix stabilize a cross-armed pro-BMP conformation and regulate transition between cross-armed, latent and open-armed, nonlatent pro-BMP conformations.

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