4YC3 image
Deposition Date 2015-02-19
Release Date 2016-04-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4YC3
Keywords:
Title:
CDK1/CyclinB1/CKS2 Apo
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent kinase 1
Gene (Uniprot):CDK1
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:G2/mitotic-specific cyclin-B1
Gene (Uniprot):CCNB1
Chain IDs:B
Chain Length:273
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent kinases regulatory subunit 2
Gene (Uniprot):CKS2
Chain IDs:C
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
CDK1 structures reveal conserved and unique features of the essential cell cycle CDK.
Nat Commun 6 6769 6769 (2015)
PMID: 25864384 DOI: 10.1038/ncomms7769

Abstact

CDK1 is the only essential cell cycle CDK in human cells and is required for successful completion of M-phase. It is the founding member of the CDK family and is conserved across all eukaryotes. Here we report the crystal structures of complexes of CDK1-Cks1 and CDK1-cyclin B-Cks2. These structures confirm the conserved nature of the inactive monomeric CDK fold and its ability to be remodelled by cyclin binding. Relative to CDK2-cyclin A, CDK1-cyclin B is less thermally stable, has a smaller interfacial surface, is more susceptible to activation segment dephosphorylation and shows differences in the substrate sequence features that determine activity. Both CDK1 and CDK2 are potential cancer targets for which selective compounds are required. We also describe the first structure of CDK1 bound to a potent ATP-competitive inhibitor and identify aspects of CDK1 structure and plasticity that might be exploited to develop CDK1-selective inhibitors.

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Primary Citation of related structures