4Y61 image
Deposition Date 2015-02-12
Release Date 2015-06-03
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4Y61
Keywords:
HYDROLASE/SIGNALING PROTEIN
Title:
Crystal structure of the complex between Slitrk2 LRR1 and PTP delta Ig1-Fn1
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.36 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
4Y61 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Receptor-type tyrosine-protein phosphatase delta
Gene (Uniprot):Ptprd
Chain IDs:A
Chain Length:398
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:Q64487 Pfam ID:PF07679, PF13927, PF00041
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SLIT and NTRK-like protein 2
Gene (Uniprot):Slitrk2
Chain IDs:B
Chain Length:272
Number of Molecules:1
Biological Source:Mus musculus
UniProt ID:Q810C0 Pfam ID:PF13855
Ligand Molecules
NAG
Primary Citation
Structure of Slitrk2-PTP delta complex reveals mechanisms for splicing-dependent trans-synaptic adhesion.
Sci Rep 5 9686 9686 (2015)
PMID: 25989451 DOI: 10.1038/srep09686

Abstact

Selective binding between pre- and postsynaptic adhesion molecules can induce synaptic differentiation. Here we report the crystal structure of a synaptogenic trans-synaptic adhesion complex between Slit and Trk-like family member 2 (Slitrk2) and receptor protein tyrosine phosphatase (RPTP) δ. The structure and site-directed mutational analysis revealed the structural basis of splicing-dependent adhesion between Slitrks and type IIa RPTPs for inducing synaptic differentiation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
4Y61