ISDA

Deposition Date 2015-02-09

Release Date 2015-05-27

Last Version Date 2024-11-06

Entry Detail

PDB ID:

4Y2D

Keywords:

IMMUNE SYSTEM

Title:

Crystal structure of the mCD1d/7DW8-5/iNKTCR ternary complex

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)
Mus musculus, Homo sapiens (Taxon ID: 10090, 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.05 Å

R-Value Free:

0.25

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antigen-presenting glycoprotein CD1d1
Gene (Uniprot):Cd1d1
Chain IDs:A, E
Chain Length:285
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P11609 Pfam ID:PF16497, PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B, F
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:P01887 Pfam ID:PF07654

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)
Chain IDs:C, G
Chain Length:209
Number of Molecules:2
Biological Source:Mus musculus, Homo sapiens

UniProt ID:A0A0B4J1J9,P01848 Pfam ID:PF07686, PF09291

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)
Chain IDs:D, H
Chain Length:241
Number of Molecules:2
Biological Source:Mus musculus, Homo sapiens

UniProt ID:A2NTY6,A0A5B9 Pfam ID:PF07686, PF07654

Ligand Molecules