4Y1T image
Deposition Date 2015-02-09
Release Date 2015-09-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4Y1T
Keywords:
Title:
Structural basis for Ca2+-mediated interaction of the perforin C2 domain with lipid membranes
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Perforin-1
Gene (Uniprot):Prf1
Mutagens:W427A, Y430A, Y486A, W488A
Chain IDs:A
Chain Length:149
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural Basis for Ca2+-mediated Interaction of the Perforin C2 Domain with Lipid Membranes.
J.Biol.Chem. 290 25213 25226 (2015)
PMID: 26306037 DOI: 10.1074/jbc.M115.668384

Abstact

Natural killer cells and cytotoxic T-lymphocytes deploy perforin and granzymes to kill infected host cells. Perforin, secreted by immune cells, binds target membranes to form pores that deliver pro-apoptotic granzymes into the target cell. A crucial first step in this process is interaction of its C2 domain with target cell membranes, which is a calcium-dependent event. Some aspects of this process are understood, but many molecular details remain unclear. To address this, we investigated the mechanism of Ca(2+) and lipid binding to the C2 domain by NMR spectroscopy and x-ray crystallography. Calcium titrations, together with dodecylphosphocholine micelle experiments, confirmed that multiple Ca(2+) ions bind within the calcium-binding regions, activating perforin with respect to membrane binding. We have also determined the affinities of several of these binding sites and have shown that this interaction causes a significant structural rearrangement in CBR1. Thus, it is proposed that Ca(2+) binding at the weakest affinity site triggers changes in the C2 domain that facilitate its interaction with lipid membranes.

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Primary Citation of related structures