4XWH image
Deposition Date 2015-01-28
Release Date 2016-02-03
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4XWH
Keywords:
Title:
Crystal structure of the human N-acetyl-alpha-glucosaminidase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-N-acetylglucosaminidase
Gene (Uniprot):NAGLU
Chain IDs:A
Chain Length:720
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural characterization of the alpha-N-acetylglucosaminidase, a key enzyme in the pathogenesis of Sanfilippo syndrome B.
J.Struct.Biol. 205 65 71 (2019)
PMID: 30802506 DOI: 10.1016/j.jsb.2019.02.005

Abstact

Mucopolysaccharidosis III B (MPS III-B) is a rare lysosomal storage disorder caused by deficiencies in Alpha-N-acetylglucosaminidase (NAGLU) for which there is currently no cure, and present treatment is largely supportive. Understanding the structure of NAGLU may allow for identification of novel therapeutic targets for MPS III-B. Here we describe the first crystal structure of human NAGLU, determined to a resolution of 2.3 Å. The crystal structure reveals a novel homotrimeric configuration, maintained primarily by hydrophobic and electrostatic interactions via domain II of three contiguous domains from the N- to C-terminus. The active site cleft is located between domains II and III. Catalytic glutamate residues, E316 and E446, are located at the top of the (α/β)8 barrel structure in domain II. We utilized the three-dimensional structure of NAGLU to map several MPS III-B mutations, and hypothesize their functional consequences. Revealing atomic level structural information about this critical lysosomal enzyme paves the way for the design of novel therapeutics to target the underlying causes of MPS III-B.

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