4XV6 image
Deposition Date 2015-01-26
Release Date 2015-02-18
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4XV6
Keywords:
Title:
CcP gateless cavity
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.13
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c peroxidase, mitochondrial
Gene (Uniprot):CCP1
Mutations:P190G, W191G
Chain IDs:A
Chain Length:289
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
One Crystal, Two Temperatures: Cryocooling Penalties Alter Ligand Binding to Transient Protein Sites.
Chembiochem 16 1560 1564 (2015)
PMID: 26032594 DOI: 10.1002/cbic.201500196

Abstact

Interrogating fragment libraries by X-ray crystallography is a powerful strategy for discovering allosteric ligands for protein targets. Cryocooling of crystals should theoretically increase the fraction of occupied binding sites and decrease radiation damage. However, it might also perturb protein conformations that can be accessed at room temperature. Using data from crystals measured consecutively at room temperature and at cryogenic temperature, we found that transient binding sites could be abolished at the cryogenic temperatures employed by standard approaches. Changing the temperature at which the crystallographic data was collected could provide a deliberate perturbation to the equilibrium of protein conformations and help to visualize hidden sites with great potential to allosterically modulate protein function.

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Primary Citation of related structures