4XT3 image
Deposition Date 2015-01-22
Release Date 2015-03-04
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4XT3
Title:
Structure of a viral GPCR bound to human chemokine CX3CL1
Biological Source:
Source Organism:
Cytomegalovirus (Taxon ID: 10358)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.32
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:G-protein coupled receptor homolog US28
Gene (Uniprot):US28
Chain IDs:A
Chain Length:362
Number of Molecules:1
Biological Source:Cytomegalovirus
Polymer Type:polypeptide(L)
Molecule:Fractalkine
Gene (Uniprot):CX3CL1
Chain IDs:B
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA B GLN modified residue
Peptide-like Molecules
PRD_900017
Primary Citation
Structural biology. Structural basis for chemokine recognition and activation of a viral G protein-coupled receptor.
Science 347 1113 1117 (2015)
PMID: 25745166 DOI: 10.1126/science.aaa5026

Abstact

Chemokines are small proteins that function as immune modulators through activation of chemokine G protein-coupled receptors (GPCRs). Several viruses also encode chemokines and chemokine receptors to subvert the host immune response. How protein ligands activate GPCRs remains unknown. We report the crystal structure at 2.9 angstrom resolution of the human cytomegalovirus GPCR US28 in complex with the chemokine domain of human CX3CL1 (fractalkine). The globular body of CX3CL1 is perched on top of the US28 extracellular vestibule, whereas its amino terminus projects into the central core of US28. The transmembrane helices of US28 adopt an active-state-like conformation. Atomic-level simulations suggest that the agonist-independent activity of US28 may be due to an amino acid network evolved in the viral GPCR to destabilize the receptor's inactive state.

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Primary Citation of related structures