4XR8 image
Deposition Date 2015-01-20
Release Date 2016-02-03
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4XR8
Title:
Crystal structure of the HPV16 E6/E6AP/p53 ternary complex at 2.25 A resolution
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Maltose-binding periplasmic protein, ubiquitin ligase E6AP
Gene (Uniprot):malE
Mutations:D83A,K84A,K240A,E360A,D364A,K363A
Chain IDs:A, B
Chain Length:383
Number of Molecules:2
Biological Source:Escherichia coli, HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53
Gene (Uniprot):TP53
Chain IDs:C, D
Chain Length:199
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Protein E6
Gene (Uniprot):E6
Mutations:C80S,C97S,C111S,C140S
Chain IDs:E (auth: F), F (auth: H)
Chain Length:151
Number of Molecules:2
Biological Source:Human papillomavirus type 16
Peptide-like Molecules
PRD_900001
Primary Citation
Structure of the E6/E6AP/p53 complex required for HPV-mediated degradation of p53.
Nature 529 541 545 (2016)
PMID: 26789255 DOI: 10.1038/nature16481

Abstact

The p53 pro-apoptotic tumour suppressor is mutated or functionally altered in most cancers. In epithelial tumours induced by 'high-risk' mucosal human papilloma viruses, including human cervical carcinoma and a growing number of head-and-neck cancers, p53 is degraded by the viral oncoprotein E6 (ref. 2). In this process, E6 binds to a short leucine (L)-rich LxxLL consensus sequence within the cellular ubiquitin ligase E6AP. Subsequently, the E6/E6AP heterodimer recruits and degrades p53 (ref. 4). Neither E6 nor E6AP are separately able to recruit p53 (refs 3, 5), and the precise mode of assembly of E6, E6AP and p53 is unknown. Here we solve the crystal structure of a ternary complex comprising full-length human papilloma virus type 16 (HPV-16) E6, the LxxLL motif of E6AP and the core domain of p53. The LxxLL motif of E6AP renders the conformation of E6 competent for interaction with p53 by structuring a p53-binding cleft on E6. Mutagenesis of critical positions at the E6-p53 interface disrupts p53 degradation. The E6-binding site of p53 is distal from previously described DNA- and protein-binding surfaces of the core domain. This suggests that, in principle, E6 may avoid competition with cellular factors by targeting both free and bound p53 molecules. The E6/E6AP/p53 complex represents a prototype of viral hijacking of both the ubiquitin-mediated protein degradation pathway and the p53 tumour suppressor pathway. The present structure provides a framework for the design of inhibitory therapeutic strategies against oncogenesis mediated by human papilloma virus.

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Primary Citation of related structures