4XPY image
Deposition Date 2015-01-18
Release Date 2015-04-29
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4XPY
Title:
Crystal structure of hemerythrin : L114Y mutant
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.13 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 6
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bacteriohemerythrin
Gene (Uniprot):MCA0715
Chain IDs:A
Chain Length:131
Number of Molecules:1
Biological Source:Methylococcus capsulatus str. Bath
Primary Citation
The bacteriohemerythrin from Methylococcus capsulatus (Bath): Crystal structures reveal that Leu114 regulates a water tunnel.
J.Inorg.Biochem. 150 81 89 (2015)
PMID: 25890483 DOI: 10.1016/j.jinorgbio.2015.04.001

Abstact

The bacteriohemerythrin (McHr) from Methylococcus capsulatus (Bath) is an oxygen carrier that serves as a transporter to deliver O2 from the cytosol of the bacterial cell body to the particulate methane monooxygenase residing in the intracytoplasmic membranes for methane oxidation. Here we report X-ray protein crystal structures of the recombinant wild type (WT) McHr and its L114A, L114Y and L114F mutants. The structure of the WT reveals a possible water tunnel in the McHr that might be linked to its faster autoxidation relative to hemerythrin in marine invertebrates. With Leu114 positioned at the end of this putative water tunnel, the hydrophobic side chain of this residue seems to play a prominent role in controlling the access of the water molecule required for autoxidation. This hypothesis is examined by comparing the autoxidation rates of the WT McHr with those of the L114A, L114Y and L114F mutants. The biochemical data are correlated with structural insights derived from the analysis of the putative water tunnels in the various McHr proteins provided by the X-ray structures.

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